Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs7499544 chr16:8712407 T/A 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs7499607 chr16:8705664 C/T 3.11E-5 509 23.93 17.43 11.7 KM Plot
LGG rs7499954 chr16:8711683 C/T 2.26E-7 501 8.17 17.32 24.05 KM Plot
LGG rs75023858 chr11:69024703 T/G 3.04E-5 507 22.6 22.7 19.05 KM Plot
LGG rs75149952 chr5:169010162 A/T 1.59E-8 507 22.12 23.85 6.83 KM Plot
LGG rs753794 chr10:86028605 C/G 3.2E-6 508 18.63 24.32 21.6 KM Plot
LGG rs75420205 chr11:69019625 C/T 2.92E-5 509 22.6 22.7 19.05 KM Plot
LGG rs75495760 chr8:6186111 T/G 2.5E-5 494 22.47 23.93 7.72 KM Plot
LGG rs7558827 chr2:86923178 A/G 9.05E-5 498 22.78 24.03 10.93 KM Plot
LGG rs75592308 chr6:88251827 G/A 5.05E-6 505 22.58 24.5 4.08 KM Plot
LGG rs75599337 chr5:168974490 A/T 1.42E-8 509 22.12 23.85 6.83 KM Plot
LGG rs75614184 chr11:69024612 T/C 3.36E-5 509 22.67 22.57 19.05 KM Plot
LGG rs75626669 chr2:2584306 C/T 2.61E-7 496 22.83 20.3 7.6 KM Plot
LGG rs75679723 chr6:53148841 C/T 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs7579332 chr2:74402572 A/G 2.6E-5 495 21.7 24.23 11.57 KM Plot